A hierarchical approach to incorporating habitat assessment into an existing fisheries monitoring framework

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dc.contributor.advisorPollack, Jennifer Beseres
dc.contributor.authorClarkson, Emma L.
dc.contributor.committeeMemberFisher, Mark
dc.contributor.committeeMemberGibeaut, James
dc.contributor.committeeMemberWalther, Benjamin
dc.creator.orcidhttps://orcid.org/0000-0001-7208-7289en_US
dc.date.accessioned2021-10-07T19:52:18Z
dc.date.available2021-10-07T19:52:18Z
dc.date.issued2021-08
dc.description.abstractThe extent and quality of estuarine habitat has a significant influence on the growth, recruitment, and survival of fish and invertebrate species. The Sustainable Fisheries Act of 1996, part of the Magnuson Stevens Fisheries Conservation and Management Act, mandated designation and monitoring of “Essential Fish Habitat” (EFH), creating the need for efficient, effective, and accurate approaches for monitoring habitat at multiple spatial scales. Because the relationships between fisheries species and their associated habitats are complex and can vary across ontogenies and regions, approaches to monitoring faunal-habitat associations are also needed to quantify the impact of EFH on fisheries stocks. However, funding limitations can prohibit monitoring fauna, habitat, and faunal-habitat associations at the multiple spatial and temporal scales necessary to accurately quantify faunal response to habitat change. The resulting information gap creates challenges to using science to inform decision making, especially in cases of reactive management decisions that are typical of state agencies. This dissertation explores the resource management potential of utilizing free, publicly available datasets to examine estuarine faunal-habitat associations at multiple spatial scales in Texas. A hierarchical approach was used to link three tiers of habitat data to faunal abundance data from Texas Parks and Wildlife Department’s (TPWD) Fisheries Independent Monitoring (FIM) program to evaluate the influence of habitat availability and quality on target species’ occurrence and abundance. Target species were selected based on their commercial and recreational importance and included Spotted Seatrout (Cynoscion nebulosus), Red Drum (Sciaenops ocellatus), Atlantic croaker (Micropogonias undulatus), Blue crab (Callinectes sapidus), Brown shrimp (Farfantepenaeus aztecus), and White shrimp (Litopenaeus setiferus). The three tiers are used to monitor fauna and associated fauna at multiple spatial and temporal scales and range from broad, large spatiotemporal scale assessments using remote sensing (Tier 1) to more detailed in-situ observations used to capture causal relationships (Tier 3). In this study, the three tiers of habitat data include: (Tier 1) a publicly available, remotely sensed habitat mapping product (2004 NOAA Benthic Atlas) that describes habitat presence and extent across large spatial scales, (Tier 2) the Texas seagrass monitoring program, in which seagrass quality (percent cover and species composition) is characterized annually at fixed sampling stations, and (Tier 3) a rapid, in-situ habitat assessment incorporated into the FIM methodology and conducted concurrently with bag seine sampling to monitor real-time faunal response to habitat change. The ability of all tiered approaches to detect known faunal-habitat associations demonstrates their efficacy. Structural subtidal (seagrass) and intertidal (saltmarsh and mangrove) presence and quality significantly impacted faunal occurrence and abundance. Several cases of facultative habitat use were identified, and faunal-habitat associations were typically scale-dependent and spatially explicit. The strengths and weaknesses of each tiered approach were evaluated to exemplify how complementary use of tiered data from multi-scale hierarchical monitoring can be used to fill gaps associated with any single method. The cost effective approaches utilized in this study can be translated to any management region where both Fisheries Independent Monitoring (FIM) data and existing habitat mapping and monitoring data products are available. The faunal-habitat associations characterized in this study provide a step toward quantitatively and qualitatively incorporating habitat into fisheries management decisions.en_US
dc.description.collegeCollege of Science and Engineeringen_US
dc.description.departmentLife Sciencesen_US
dc.format.extent191 pagesen_US
dc.identifier.urihttps://hdl.handle.net/1969.6/89778
dc.language.isoen_USen_US
dc.rightsThis material is made available for use in research, teaching, and private study, pursuant to U.S. Copyright law. The user assumes full responsibility for any use of the materials, including but not limited to, infringement of copyright and publication rights of reproduced materials. Any materials used should be fully credited with its source. All rights are reserved and retained regardless of current or future development or laws that may apply to fair use standards. Permission for publication of this material, in part or in full, must be secured with the author and/or publisher.en_US
dc.subjectEstuarineen_US
dc.subjectfisheriesen_US
dc.subjecthabitaten_US
dc.subjectManagementen_US
dc.subjectGulf of Mexicoen_US
dc.titleA hierarchical approach to incorporating habitat assessment into an existing fisheries monitoring frameworken_US
dc.typeTexten_US
dc.type.genreDissertationen_US
dcterms.typeText
thesis.degree.disciplineMarine Biologyen_US
thesis.degree.grantorTexas A & M University--Corpus Christien_US
thesis.degree.levelDoctoralen_US
thesis.degree.nameDoctor of Philosophyen_US

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