COS Faculty Works

Permanent URI for this collectionhttps://hdl.handle.net/1969.6/87602

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Enhanced removal of ultratrace levels of gold from wastewater using sulfur-rich covalent organic frameworks
(2024-06-01) Abubakar, Salma; Das, Gobinda; Prakasam, Thurumurugan; Jrad, Asmaa; Gándara, Felipe; Varghese, Sabu; Delclos, Thomas; Olson, Mark A.; Trabolsi, Ali
In view of the increasing global demand and consumption of gold, there is a growing need and effort to extract gold from alternative sources besides conventional mining, e.g., from water. This drive is mainly due to the potential benefits for the economy and the environment as these sources contain large quantities of the precious metal that can be utilized. Wastewater is one of these valuable sources in which the gold concentration can be in the ppb range. However, the effective selective recovery and recycling of ultratrace amounts of this metal remain a challenge. In this article, we describe the development of a covalent imine based organic framework with pores containing thioanisole functional groups (TTASDFPs) formed by the condensation of a triazine-based triamine and an aromatic dialdehyde. The sulfur-functionalized pores served as effective chelating agents to bind Au3+ ions, as evidenced by the uptake of more than 99% of the 9 ppm Au3+ solution within 2 min. This is relatively fast kinetics compared with other adsorbents reported for gold adsorption. TTASDFP also showed a high removal capacity of 245 mg·g−1 and a clear selectivity toward gold ions. More importantly, the material can capture gold at concentrations as low as 1 ppb.
Direct observation and identification of nanoplastics in ocean water
(2024-01-26) Moon, Seunghyun; Martin, Leisha M. A.; Kim, Seongmin; Zhang, Qiushi; Zhang, Renzheng; Xu, Wei; Luo, Tengfei
Millions of tons of plastics enter the oceans yearly, and they can be fragmented by ultraviolet and mechanical means into nanoplastics. Here, we report the direct observation of nanoplastics in global ocean water leveraging a unique shrinking surface bubble deposition (SSBD) technique. SSBD involves optically heating plasmonic nanoparticles to form a surface bubble and leveraging the Marangoni flow to concentrate suspended nanoplastics onto the surface, allowing direct visualization using electron microscopy. With the plasmonic nanoparticles co-deposited in SSBD, the surface-enhanced Raman spectroscopy effect is enabled for direct chemical identification of trace amounts of nanoplastics. In the water samples from two oceans, we observed nanoplastics made of nylon, polystyrene, and polyethylene terephthalate—all common in daily consumables. The plastic particles have diverse morphologies, such as nanofibers, nanoflakes, and ball-stick nanostructures. These nanoplastics may profoundly affect marine organisms, and our results can provide critical information for appropriately designing their toxicity studies.
Toward a more comprehensive approach for dissolved organic matter chemical characterization using an Orbitrap Fusion Tribrid mass spectrometer coupled with ion and liquid chromatography techniques
(American Chemical Society, 2024-02-19) Bergmann, Daniela; Matarrita-Rodriguez, Jessie; Abdulla, Hussain
Dissolved organic matter (DOM) represents one of the largest active organic carbon pools in the global carbon cycle. Although extensively studied, only <10% of DOM has been chemically characterized into individual dissolved compounds due to its molecular complexity. This study introduced a more comprehensive DOM characterization method by coupling both ion chromatography (IC) and liquid chromatography (LC) with high mass accuracy and resolution mass spectrometry. We presented a new on-the-fly mass calibration of the Orbitrap technique by utilizing the “lock mass” function in the Orbitrap Fusion Tribrid mass spectrometer (OT-FTMS), which assures high mass accuracy at every scan by a postcolumn introduction of internal labeled standards. With both IC and LC, tested unlabeled standards of amino acids, small peptides, and organic acids were consistently below 1.0 ppm mass error, giving the OT-FTMS the potential of reaching mass accuracy of the Fourier-transform ion cyclotron resonance mass spectrometer. In addition to mass accuracy, a pooled quality control sample (QC) was used to increase reproducibility by applying systematic error removal using random forest (SERRF). Using an untargeted mass spectrometry approach, estuarine DOM samples were analyzed by OT-FTMS coupled to IC in negative mode and LC in positive mode detection to cover a wide range of highly cationic to highly anionic molecules. As a proof of concept, we focused on elucidating the structures of three distinct DOM compound classes with varied acidities and basicities. In UPLC-OT-FTMS, a total of 915 compounds were detected. We putatively elucidated 44 small peptides and 33 deaminated peptides of these compounds. With IC-OT-FTMS, a total of 1432 compounds were detected. We putatively elucidated 20 peptides, 268 deaminated peptides, and 188 organic acids. Except for five compounds, all putatively elucidated compounds were uniquely detected in their corresponding chromatography technique. These results highlight the need for combining these two techniques to provide a more comprehensive method for DOM characterization. Application of the combined IC and LC techniques is not limited to DOM chemical characterization. It can analyze other complex compound mixtures, such as metabolites, and anthropogenic pollutants, such as pesticides and endocrine-disrupting chemicals, in environmental and biological samples.
Kinematics and controlling factors of slow-moving landslides in central Texas: A multisource data fusion approach
(2024-05-14) Gebremichael, Esayas; Hernandez, Rosbeidy; Alsleben, Helge; Ahmed, Mohamed; Denne, Richard; Harvey, Omar
The Austin metropolitan area has experienced unprecedented economic and population growth over the past two decades. This rapid growth is leading communities to settle in areas susceptible to landslides, necessitating a comprehensive analysis of landslide risks and the development of early warning systems. This could be accomplished with better confidence for slow-moving landslides, whose occurrences could be forecasted by monitoring precursory ground displacement. This study employed a combination of ground- and satellite-based observations and techniques to assess the kinematics of slow-moving landslides and identify the controlling and triggering factors that contribute to their occurrence. By closely examining landslide events in the Shoal Creek area, potential failure modes across the study area were inferred. The findings revealed that landslide-prone areas are undergoing creep deformation at an extremely slow rate (up to −4.29 mm/yr). These areas lie on moderate to steep slopes (>22◦) and are predominantly composed of clay-rich units belonging to the Del Rio and Eagle Ford formations. Based on the incidents at Shoal Creek, episodes of intense rainfall acting on the landslide-prone areas are determined to be the main trigger for landslide processes in the region.
Cellular response of keratinocytes to the entry and accumulation of nanoplastic particles
(2024-04-29) Martin, Leisha; Simpson, Kayla; Brzezinski, Molly; Watt, John; Xu, Wei
Plastic accumulation in the environment is rapidly increasing, and nanoplastics (NP), byproducts of environmental weathering of bulk plastic waste, pose a significant public health risk. Particles may enter the human body through many possible routes such as ingestion, inhalation, and skin absorption. However, studies on NP penetration and accumulation in human skin are limited. Loss or reduction of the keratinized skin barrier may enhance the skin penetration of NPs. The present study investigated the entry of NPs into a human skin system modeling skin with compromised barrier functions and cellular responses to the intracellular accumulations of NPs. Two in vitro models were employed to simulate human skin lacking keratinized barriers. The first model was an ex vivo human skin culture with the keratinized dermal layer (stratum corneum) removed. The second model was a 3D keratinocyte/ dermal fibroblast cell co-culture model with stratified keratinocytes on the top and a monolayer of skin fibroblast cells co-cultured at the bottom. The penetration and accumulation of the NPs in different cell types were observed using fluorescent microscopy, confocal microscopy, and cryogenic electron microscopy (cryo-EM). The cellular responses of keratinocytes and dermal fibroblast cells to stress induced by NPs stress were measured. The genetic regulatory pathway of keratinocytes to the intracellular NPs was identified using transcript analyses and KEGG pathway analysis. The cellular uptake of NPs by skin cells was confirmed by imaging analyses. Transepidermal transport and penetration of NPs through the skin epidermis were observed. According to the gene expression and pathway analyses, an IL-17 signaling pathway was identified as the trigger for cellular responses to internal NP accumulation in the keratinocytes. The transepidermal NPs were also found in co-cultured dermal fibroblast cells and resulted in a large-scale transition from fibroblast cells to myofibroblast cells with enhanced production of α-smooth muscle actin and pro-Collagen Ia. The upregulation of inflammatory factors and cell activation may result in skin inflammation and ultimately trigger immune responses.
Dynamics of methane emissions from northwestern Gulf of Mexico subtropical seagrass meadows
(2024-03-21) Yu, Hao; Coffin, Richard; Organ, Hannah
While seagrass meadows are perceived to be pertinent blue carbon reservoirs, they also potentially release methane (CH4) into the atmosphere. Seasonal and diurnal variations in CH4 emissions from a subtropical hypersaline lagoon dominated by Halodule wrightii in southern Texas, USA, on the northwest coast of the Gulf of Mexico were investigated. Dissolved CH4 concentrations decreased in the daytime and increased overnight during the diel observation period, which could be explained by photosynthesis and respiration of seagrasses. Photosynthetic oxygen was found to significantly reduce CH4 emissions from seagrass sediment. Diffusive transport contributed slightly to the release of CH4 from the sediment to the water column, while plant mediation might be the primary mechanism. The diffusive CH4 flux at the sea-air interface was 12.3–816.2 µmol/m2 d, over the range of the sea-air fluxes previously reported from other seagrass meadows. This was related to relatively higher dissolved CH4 concentrations (11.6–258.2 nmol/L) in a mostly closed lagoon with restricted water exchange. This study emphasizes seagrass meadows in the subtropical hypersaline lagoon as a source of atmospheric CH4, providing insights into the interactions between seagrass ecosystems and methane dynamics, with potential implications for seagrass meadow management and conservation efforts.
Global diversity and distribution of rhizosphere and root‑associated fungi in coastal wetlands: A systematic review
(2024-03-22) Lumibao, Candice Y.; Harris, Georgia; Birnbaum, Christina
Coastal wetlands have been long recognized for their importance to biodiversity and many biogeochemical processes including carbon sequestration; however, our understanding of plant-microbe interactions that govern many processes in these ecosystems remains elusive. Fungal communities are known to play critical roles in coastal wetlands, particularly due to their close relationships with plants, yet, systematic understanding of their distributional patterns and the factors shaping these patterns in natural coastal wetland environments has been rarely assessed. We synthesized existing published literature from fifty-one studies spanning 60 years to examine global fungal distributional patterns in coastal wetlands, draw linkages between fungi, the plant communities, and their environment, and identify gaps in fungal research and suggest future research directions. We focused on studies that reported root-associated fungi and fungi from the plant rhizosphere (i.e., soil surrounding roots) in coastal dunes, intertidal flats, salt marshes, and tidal wetlands. Our synthesis has revealed that (1) 203 fungal species were reported from salt marshes, 59 fungal species from coastal dunes, 32 from tidal wetlands, and ten from intertidal flats; (2) rhizosphere fungal communities were more species-rich and reported more often for all ecosystems except in salt marshes; and (3) nineteen different fungal guilds, which are predominantly arbuscular mycorrhizal fungi. We conclude that more research is needed to better understand root-associated fungal diversity in less studied ecosystems reviewed here. We have identified knowledge gaps in reported data and outlined suggestions to facilitate future plant-fungal research in these declining, but important, coastal ecosystems.
Detection of astrophysical neutrinos at prospective locations of dark matter detectors
(2024-02-29) Zhuang, Yi; Strigari, Louis E.; Jin, Lei; Sinha, Samiran
We study the prospects for detection of solar, atmospheric neutrino, and diffuse supernova neutrino background (DSNB) fluxes at future large-scale dark matter detectors through both electron and nuclear recoils. We specifically examine how the detection prospects change for several prospective detector locations [Sanford Underground Research Facility (SURF), SNOlab, Gran Sasso, China Jinping Underground Laboratory (CJPL), and Kamioka] and improve upon the statistical methodologies used in previous studies. Because of its ability to measure lower neutrino energies than other locations, we find that the best prospects for the atmospheric neutrino flux are at the SURF location, while the prospects are weakest at CJPL because it is restricted to higher neutrino energies. On the contrary, the prospects for the DSNB are best at CJPL, due largely to the reduced atmospheric neutrino background at this location. Including full detector resolution and efficiency models, the CNO component of the solar flux is detectable via the electron recoil channel with exposures of ∼103 ton-yr for all locations. These results highlight the benefits for employing two detector locations, one at high and one at low latitude.
Ciliary propulsion through non-uniform flows
(2024-04-05) Nganguia, H.; Palaniappan, Devanayagam
The classical paper by Lighthill (Commun. Pure Appl. Maths, vol. 109, 1952, p. 118) on the propulsion of ciliated microorganisms has become the reference against which many modern studies on swimming in low Reynolds number are compared. However, Lighthill’s study was limited to propulsion in a uniform flow, whereas several biologically relevant microorganisms experience non-uniform flows. Here we propose a benchmark for ciliary propulsion in paraboloidal flows. We first consider the axisymmetric problem, with the microorganisms on the centreline of the background flow, and derive exact analytical solutions for the flow field. Our results reveal flow features, swimming characteristics and performance metrics markedly different from those generated in a uniform flow. In particular, the background paraboloidal flow introduces a Stokes quadrupole singularity at the leading-order flow field, generating vortices. Moreover, we determine the necessary conditions on the strength of the background flow for optimal power dissipation and swimming efficiency. We then consider the more general case of a microorganism off the centreline of the background flow. In this case, the squirmer experiences a paraboloidal, linear shear and uniform flows due to its position relative to the flow’s centreline. Our findings show that while the linear shear flow does not affect the translational and rotational velocities of the squirmer, it does influence the velocity field and, therefore, the power dissipation.
The effect of particle geometry on squirming in a heterogeneous medium
(2024-04-02) Demir, E.; van Gogh, B.; Palaniappan, Devanayagam; Nganguia, H.
Biological microorganisms and artificial micro-swimmers often locomote in heterogeneous viscous environments consisting of networks of obstacles embedded into viscous fluid media. In this work, we use the squirmer model and present a numerical investigation of the effects of shape on swimming in a heterogeneous medium. Specifically, we analyse the microorganism’s propulsion speed as well as its energetic cost and swimming efficiency. The analysis allows us to probe the general characteristics of swimming in a heterogeneous viscous environment in comparison with the case of a purely viscous fluid. We found that a spheroidal microorganism always propels faster, expends less energy and is more efficient than a spherical microorganism in either a homogeneous fluid or a heterogeneous medium. Moreover, we determined that above a critical eccentricity, a spheroidal microorganism in a heterogeneous medium can swim faster than a spherical microorganism in a homogeneous fluid. Based on an analysis of the forces acting on the squirmer, we offer an explanation for the decrease in the squirmer’s speed observed in heterogeneous media compared with homogeneous fluids.
Mathematics education researchers’ practices in interdisciplinary collaborations: Embracing different ways of knowing
(2024-03-21) Suazo-Flores, Elizabeth; Walker III, William S.; Kastberg, Signe E.; Aqazade, Mahtob; Alyami, Hanan
Mathematics education researchers (MERs) use practices unique to the mathematics education discipline to conduct their work. MERs’ practices, i.e., ways of being, interacting, and operating, define the field of mathematics education, are initially learned in doctoral preparation programs, and are encouraged and sanctioned by conferences and publications. Disciplinary practices facilitate MERs’ interactions within mathematics education. When working in interdisciplinary groups, differences in disciplinary ways of being, interacting, and operating can create challenges with completing research and other work. Since MERs’ engagement in interdisciplinary collaborations is encouraged and can result in products contributing to the evolution of the mathematics education discipline, it is important to explore what practices MERs use in interdisciplinary collaborations. We interviewed four MERs who led international interdisciplinary collaborations and used qualitative content analysis to create descriptions of practices described by MERs in their collaborations. Five practices were common between the MERs in interdisciplinary collaborations. MERs conducted interdisciplinary work by using practices that allowed them to situate themselves and others in the group (i.e., being practices), develop ideas (i.e., interacting practices), work towards common goals, and use structures to get the work done (i.e., operating practices). We argue that MERs developed new practices to position themselves and others, interact with practitioners from other disciplines, and get interdisciplinary work done. This study contributes to the evolution of the mathematics education discipline by offering five practices that can orient MERs to conducting interdisciplinary work and discussing how MERs experience interdisciplinary collaborations beyond providing mathematics education expertise.
Analysing micro- and nanoplastics with cutting-edge infrared spectroscopy techniques: A critical review
(2024-03-27) Xie, Junhao; Gowen, Aoife; Xu, Wei; Xu, Junli
The escalating prominence of micro- and nanoplastics (MNPs) as emerging anthropogenic pollutants has sparked widespread scientific and public interest. These minuscule particles pervade the global environment, permeating drinking water and food sources, prompting concerns regarding their environmental impacts and potential risks to human health. In recent years, the field of MNP research has witnessed the development and application of cutting-edge infrared (IR) spectroscopic instruments. This review focuses on the recent application of advanced IR spectroscopic techniques and relevant instrumentation to analyse MNPs. A comprehensive literature search was conducted, encompassing articles published within the past three years. The findings revealed that Fourier transform infrared (FTIR) spectroscopy stands as the most used technique, with focal plane array FTIR (FPA-FTIR) representing the cutting edge in FTIR spectroscopy. The second most popular technique is quantum cascade laser infrared (QCL-IR) spectroscopy, which has facilitated rapid analysis of plastic particles. Following closely is optical photothermal infrared (O-PTIR) spectroscopy, which can furnish submicron spatial resolution. Subsequently, there is atomic force microscopy-based infrared (AFM-IR) spectroscopy, which has made it feasible to analyse MNPs at the nanoscale level. The most advanced IR instruments identified in articles covered in this review were compared. Comparison metrics encompass substrates/filters, data quality, spatial resolution, data acquisition speed, data processing and cost. The limitations of these IR instruments were identified, and recommendations to address these limitations were proposed. The findings of this review offer valuable guidance to MNP researchers in selecting suitable instrumentation for their research experiments, thereby facilitating advancements in research aimed at enhancing our understanding of the environmental and human health risks associated with MNPs.
Insights into glacial processes from micromorphology of silt-sized sediment
(2023-06-20) Lepp, Allison P.; Miller, Lauren E.; Anderson, John B.; O'Regan, Matt; Winsborrow, Monica C.M.; Smith, James A.; Hillenbrand, Claus-Dieter; Wellner, Julia S.; Prothro, Lindsay O.; Podolskiy, Evgeny A.
Meltwater plume deposits (MPDs) from marine sediment cores have elucidated clearly connected, yet difficult to constrain, relationships between ice-marginal landform construction, grounding-zone retreat patterns, and subglacial hydrology for several glacial systems in both hemispheres. Few attempts have been made, however, to infer coveted details of subglacial hydrology, such as flow regime, drainage style, and mode(s) of sediment transport through time from grain-scale characteristics of MPDs. Using MPD, till, and ice-proximal diamicton samples collected offshore of six modern and relict glacial systems in both hemispheres, we examine whether grain-shape distributions and microtexture assemblages (collectively, grain micromorphology) of the silt fraction are the result of subglacial meltwater action, or are indistinguishable from glacial proximal and subglacial sediments from the same region. We find that of all grains imaged (n=9,400), three-quarters can be described by one-quarter of the full range of measured shape morphometrics, indicating widespread and efficient abrasive processes in subglacial environments. Microtexture analysis reveals that while grains comprising MPDs show evidence of edge rounding more often than tills, fluvial microtextures occur in modest amounts on grain surfaces. Furthermore, MPDs retain many mechanical (i.e., glacial) textures in comparable abundances to tills. Significant alteration of MPDs from till sources is observed for systems (1) for which intensive, potentially catastrophic, meltwater drainage events in the Holocene are inferred from marine geologic records, and (2) with comparatively less mature till grains and a contribution of supraglacial melt to the bed, indicating that quantifiable grain-shape alteration of MPDs may reflect a combination of young till, high-energy flow of subglacial meltwater, persistent sediment entrainment, and/or long sediment transport distances. We encourage future works to integrate grain micromorphology into site-specific marine sediment analyses, which may distinguish periods of persistent, well-connected subglacial discharge from periods of sporadic or disorganized drainage and provide context needed to estimate sediment fluxes and characterize ice response to subglacial meltwater transmission. In addition, this work demonstrates that glacial and fluvial surface textures are retained on silts in adequate abundance for microtexture analysis.
Lower-Dimensional model of the flow and transport processes in thin domains by numerical averaging technique
(2023-12-25) Vasilyeva, Maria; Mbroh, Nana Adjoah; Mehrubeoglu, Mehrube
In this work, we present a lower-dimensional model for flow and transport problems in thin domains with rough walls. The full-order model is given for a fully resolved geometry, wherein we consider Stokes flow and a time-dependent diffusion–convection equation with inlet and outlet boundary conditions and zero-flux boundary conditions for both the flow and transport problems on domain walls. Generally, discretizations of a full-order model by classical numerical schemes result in very large discrete problems, which are computationally expensive given that sufficiently fine grids are needed for the approximation. To construct a computationally efficient numerical method, we propose a model-order-reduction numerical technique to reduce the full-order model to a lower-dimensional model. The construction of the lower-dimensional model for the flow and the transport problem is based on the finite volume method and the concept of numerical averaging. Numerical results are presented for three test geometries with varying roughness of walls and thickness of the two-dimensional domain to show the accuracy and applicability of the proposed scheme. In our numerical simulations, we use solutions obtained from the finite element method on a fine grid that can resolve the complex geometry at the grid level as the reference solution to the problem.
Commuters: A waterbird provides a new view of how species may utilize cities and wildlands
(2023-07-06) Shlepr, Katherine R; Evans, Betsy A; Gawlik, Dale E
Traditional classifications of vertebrates’ responses to urbanization fail to capture the behaviour of those that rely on both urban and wildland resources for population persistence. Here, we use the wood stork (Mycteria americana), a species that makes daily foraging trips up to 74 km away from its nest, as an example of a previously unrecognized response to urbanization. We monitored nests and sampled diets at stork colonies in south Florida (USA) during 2014–2020 to investigate how storks use urban habitats. We found that urban development now comprises up to 51.6% of the land cover within the 30-km core foraging area surrounding colonies and that storks access alternative prey types within these urban areas. Our results also showed that urban-nesting storks outperformed wildland-nesting storks when the hydrological condition of the wetlands was suboptimal for foraging. Though storks still require healthy wetlands for population persistence, urban habitat benefitted storks when hydrological patterns were not ideal for prey production in wildlands. This ‘commuter’ response to urbanization, whereby individuals opt to utilize both urban and wildland resources within short time periods, may apply to other vertebrates with large home ranges.
Analysis of the vcgC gene in Vibrio vulnificus isolates from the Texas Coastal Bend region of the Gulf of Mexico
(2023-05-12) Buck, Gregory W; Brumfield, LarReshia I; Giagnocavo, Stephanie Dudics; Perkins, Danielle S; Tortosa, Alvaro Ortola; Okuyemi, Tolulope B; Carbaugh, Joshua S; Planas Costas, Githzette M; Ramirez, Gabriel D
Vibrio vulnificus is a gram-negative, halophilic bacterium normally found in temperate marine and estuarine waters. The organism may enter wounds in the skin and cause sepsis or necrotizing fasciitis; the latter condition has a 50-60% mortality rate and may result in death or disfigurement within 4-6 days. Persons exposed to coastal flood waters during hurricanes may be at risk for this organism. The virulence-correlated gene, vcgC, is specific for clinical isolates of V. vulnificus, but the function of this locus remains unknown. This study used Polymerase Chain Reaction (PCR) and novel primers for vcgC not previously described to specifically identify V. vulnificus isolates from the Texas Coastal Bend region that may result in serious infections. Of the 28 isolates, four isolates could not be revived multiple times; crude lysates of the remaining 24 Vibrio vulnificus cultures were analyzed by PCR, and 19 were found to have amplicons of 428bp for vcgC. This study confirms the presence of the vcgC gene in V. vulnificus isolates from the Texas Coastal Bend region of the Gulf of Mexico.
A meta-analysis of disturbance caused by drones on nesting birds
(2023) Cantu de Leija, Antonio; Mirzadi, Rostam E.; Randall, Jessica M.; Portmann, Maxwell D.; Mueller, Erin J.; Gawlik, Dale E.
The use of drones for monitoring nesting birds is rapidly increasing given their affordability and efficiency in bird detection and quantification across habitats. Reports of disturbance caused by drones on different bird species have been mixed, with no consensus on the degree to which different factors affect disturbance responses. Given the lack of systematic assessments of disturbance from drones on nesting birds, we conducted a formal meta-analysis to quantify the degree of disturbance caused by multi-rotor drones on nesting birds, with a particular focus on the effects of altitude of flights and species nesting traits. Seventeen studies met our criteria for inclusion in the analysis, from which we extracted 31 effect sizes in the form of log-odds ratio. Drones showed a small disturbance effect (-1.54; 95% CI: -2.83, -0.26) on nesting birds overall, but heterogeneity was large. Drone flights > 50 m showed no evidence of disturbance on nesting birds. Conversely, flights at lower altitudes (≤ 50 m) showed stronger evidence of disturbance effects, with the largest odds of disturbance observed on ground solitary and non-ground solitary nesters. Only ground colonial nesters showed no evidence of disturbance regardless of the drone altitude. We conclude that the use of drones can be an efficient and safe means of surveying nesting birds if altitude and nesting traits are considered in survey protocols. RESUMEN. El uso de drones para monitorear las aves que anidan está aumentando rápidamente dada su asequibilidad y eficiencia en la detección y cuantificación de aves en todos los hábitats. Los informes de perturbaciones causadas por drones en diferentes especies de aves han sido mixtos, sin consenso sobre el grado en que los diferentes factores afectan las respuestas de perturbación. Dada la falta de evaluaciones sistemáticas de la perturbación de los drones en las aves que anidan, realizamos un metanálisis formal para cuantificar el grado de perturbación causada por drones multirotor en las aves que anidan, haciendo foco en particular en los efectos de la altitud de los vuelos y los rasgos de anidación de las especies. Diecisiete estudios cumplieron los criterios de inclusión en el análisis, de los cuales se extrajeron 31 tamaños del efecto en forma de relación logarítmica de probabilidades. Los drones mostraron un pequeño efecto de perturbación (-1,54; IC del 95%: -2,83, -0,26) en las aves que anidan en general, pero la heterogeneidad fue grande. Los vuelos de drones > 50 m no mostraron evidencia de perturbación en las aves que anidan. Por el contrario, los vuelos a altitudes más bajas (≤ 50m) mostraron una mayor evidencia de efectos de perturbación, con las mayores probabilidades de perturbación observadas en anidadores solitarios y no terrestres. Solo los anidadores coloniales terrestres no mostraron evidencia de perturbación, independientemente de la altitud del dron. Concluimos que el uso de drones puede ser un medio eficiente y seguro para inspeccionar las aves que anidan si la altitud y los rasgos de anidación se consideran en los protocolos de monitoreo.
Image analysis reveals environmental influences on the seagrass-epiphyte dynamic relationship for Thalassia testudinum in the northwestern Gulf of Mexico
(2023-01-16) Huang, Chi; Piñón, Carissa; Mehrubeoglu, Mehrube; Cammarata, Kirk
Spatiotemporal patterns in seagrass-epiphyte dynamics for Thalassia testudinum in the northwestern Gulf of Mexico were evaluated through biomass measurements and scanned-image based metrics to investigate the potentially harmful impact of excessive epiphyte accumulations on seagrass condition. Image analysis with Spectral Angle Mapper algorithms distinguished epiphyte and uncovered seagrass leaf pixels to generate a normalized metric of leaf area coverage (epiphyte pixels/total leaf pixels). Imaging metrics were compared to biomass based metrics seasonally, among three locations with different environmental conditions (depth, salinity, temperature and nutrient levels inferred from sediment porewater measurements) near Redfish Bay, Texas, USA. Image analysis, in conjunction with biomass measures, provides enhanced insight into the seagrass-epiphyte dynamic relationship and how it varies with environmental conditions. Compared with the biomass and morphological measures, image analysis may be more informative as an indicator of environmental changes. Variation in linear regressions of epiphyte biomass vs. epiphyte area (pixels) suggested changes in the thickness and/or density of accumulated epiphytes across environmental contexts and seasons. Two different epiphyte colonization patterns were presented based on the correlation between the normalized metrics of epiphyte load and epiphyte leaf coverage. The epiphyte load was highest at low temperatures and locations with elevated DIN:P ratio in sediment porewater. Conversely, the mean leaf coverage by epiphytes stayed relatively constant (±10%) across seasons but differed by location (25% ~55% in this case), suggesting that leaf growth in this study is regulated to maintain the proportion of uncolonized leaf surface and that epiphyte coverage plays a role in its regulation.
Economic pressures of COVID-19 lockdowns result in increased timber extraction within a critically endangered region: A case study from the Pacific Forest of Ecuador
(2022-11-22) Tleimat, Jacquelyn M.; Fritts, Sarah R.; Brunner, Rebecca M.; Rodriguez, David; Lynch, Ryan L.; McCracken, Shawn F.
Although the COVID-19 lockdowns in 2020 had some environmental benefits, the pandemic's impact on the global economy has also had conservation repercussions, especially in biodiverse nations. Ecuador, which is heavily reliant on petroleum, agricultural exports, and ecotourism, experienced a rise in poverty in response to pandemic shutdowns. In this study, we sought to quantify levels of illegal timber extraction and poaching before and after the start of COVID-19 lockdowns throughout two protected areas (Reserva Jama Coaque [JCR] and Bosque Seco Lalo Loor [BSLL]) in the endangered Pacific Forest of Ecuador. We analyzed chainsaw and gunshot acoustic data recorded from devices installed in the forest canopy from December 2019 to March 2020 and October 2020 to March 2021. Results from generalized linear mixed effects models indicated less chainsaw activity before lockdowns (βpost. lockdown = 0.568 ± 0.266 SE, p-value = .030), although increased average rainfall also seemed to negatively affect chainsaw activity (βavg.rainfall = −0.002 ± 0.0006 SE, pvalue = .003). Gunshots were too infrequent to conduct statistical models; however, 87% of gunshots were detected during the ‘lockdown’ period. Observational data collected by rangers from these protected areas also noted an increase in poaching activities beginning mid to late 2020 and persisting into 2021. These results add to the steadily growing literature indicating an increase in environmental crime, particularly in biodiverse nations, catalyzed by COVID-19-related economic hardships. Identifying areas where environmental crime increased during pandemic lockdowns is vital to address both socioeconomic drivers and enforcement deficiencies to prevent further biodiversity loss and disease outbreaks and to promote ecosystem resilience. Our study also demonstrates the utility of passive acoustic monitoring to detect illegal resource extraction patterns, which can inform strategies such as game theory modeling for ranger patrol circuits and placement of real-time acoustic detection technologies to monitor and mitigate environmental crimes.
Seagrass response to wastewater inputs: Implementation of a seagrass monitoring program in two Texas estuaries
(2011-02-25) Cammarata, Kirk
The study protocol followed a recent proposal by Dunton and Pulich to the Seagrass Monitoring Work Group (Landscape Monitoring and Biological Indicators for Seagrass Conservation in Texas Coastal Waters, draft, Dunton et al. 2007) and included three components: 1) landscape monitoring using high resolution color aerial photography, 2) seagrass condition and water quality indicators, and 3) seagrass epiphyte fluorescence analysis. Findings from the third objective are presented here.

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